Fungi

Take a moment to think about those mushrooms you saw in the supermarket or growing in your garden and thought they were plants. As it turns out, most people mistake fungi for plants or bacteria. However, fungi have their kingdom: the kingdom Fungi. So, if you are interested in learning about fungi, keep reading!

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Contents
Table of contents

    What are fungi?

    Let's start by looking at the definition of fungi.

    Fungi are defined as spore-producing eukaryotic organisms found in the Fungi kingdom.

    Fungi are found all around us. They can have different shapes and colors and play important roles in our lives. For example, some fungi make plant roots work more effectively, while others help to digest the grass eaten by cows or in organic matter decomposition. Fungi are even used in biotechnology to produce enzymes for cheese-making!

    However, fungi are not always good citizens of the world. Some fungi produce diseases that affect crops and also humans. For example, the fungi Claviceps purpurea is known for causing ergot poisoning in Europe. This fungus attacks grasses (e.g., rye) and produces toxins called mycotoxins.

    Classification of fungi

    In 1866, Ernest Haeckel attempted to classify organisms and divided them into three categories: Animalia, Plantae, and Protista (microorganism). Haeckel placed fungi in the kingdom Plantae, and this classification was used until the 1950-1960s. In 1969, R.H Whittaker published a new classification that divided organisms into five kingdoms: Plantae, Animalia, Protist (eukaryotic microorganisms), Monera (prokaryotes such as archaea and bacteria), and Fungi.

    Then, in 1990, Carl Woese published a study introducing a system classification system composed of six kingdoms: Eubacteria, Archaebacteria, Protista, Fungi, Plantae, and Animalia. These six kingdoms were clustered into three domains: Bacteria, Archaea, and Eukarya (Figure 1).

    Fungi are classified based on phylogenetics, and it classifies the kingdom Fungi into seven phyla:

    • Ascomycota

    • Basidiomycota

    • Glomeromycota

    • Microsporidia

    • Blastocladiomycota

    • Neocallimastigomycota

    • Chytridiomycota

    Phylogenetics deals with the evolutionary relationship between taxa. Phylogenetic taxonomy involves grouping based on ancestral characteristics.

    Originally, a separate phylum called Zygomycota existed. Due to doubts about the relationships between the groups traditionally included in this phylum, this classification was rejected in 2007. Despite not being formally accepted, many scientists still use the term zygomycetes to indicate several types of fungi (some molds, Rhizopus, and mucor).

    Fungi characteristics

    Now, let's talk about the characteristics of fungi. Fungi are eukaryotes, just like animals and plants. However, what mainly makes them different is their mode of nutrition. While animals engulf food and plants photosynthesize, fungi have the ability to absorb externally digested nutrients.

    Fungi are achlorophyllous (they contain no chlorophyll) and heterotrophic, meaning that they use pre-existing organic sources of carbon in their environment. Most fungi are considered multicellular, but some fungi, such as yeasts, are unicellular.

    Fungi can obtain their food in two ways: as parasites or as saprobes. Parasitic fungi obtain their food by infecting living organisms, whereas saprobes obtain their food by attacking dead organic matter. Some fungi can also form symbiotic relationships with plants.

    What about reproduction? Multicellular fungi may have the ability to reproduce by sexual or asexual spores. Yeasts (unicellular fungi), however, reproduce by budding or binary fission.

    Fungi structure

    Now that we know the characteristics of fungi let's take a look at the basic body structure of a fungus (Figure 2).

    The body of a fungus is called a thallus (or fruiting body), and it is used for reproduction. A fungus can have either a holocarpic or an eucarpic thallus.

    • A holocarpic thallus means that the entire thallus is a reproductive structure.

    • An eucarpic thallus means that only a part of the thallus is used for reproduction.

    Most fungi are filamentous, and contain individual filaments called hyphae. A network of hyphae is called a mycelium, and it is used for nutrient absorption.

    Hyphae are microscopic, tubular, thread-like structures that comprise the vegetative body of a fungus.

    Since hyphae are very important when dealing with fungi, let's talk about their structure (Figure 3). Hyphae are filled with protoplasm (cytoplasm and organelles) and vary in thickness depending on function. Some hyphae might have septa (or septal pores) through which cytoplasm flows.

    Fungal hyphae also have an inner cell wall composed of chitin (except for Zygomycota, which have chitosan) and β-glucans, and an outer wall containing glycoproteins and α-glucans. Hyphae also have a cell membrane.

    Inside the hyphae, we also have structures such as mitochondria, nucleus, Golgi apparatus, endoplasmic reticulum, ribosomes, lysosomes, and peroxisomes. The fungal nucleus is small and can squeeze through the septal pores making hyphae either uni-, bi-, or even multi-nucleated! Fungi contain nuclear DNA, wrapped in histone proteins.

    Figure 4 shows the cell structure of a fungus.

    Types of fungi

    Now that we learned how fungi are classified and their basic body structure, let's dive into some of the different types of Fungi that you might not even know existed!

    Basidiomycota

    The phylum Basidiomycota is a very large group of Fungi with around 32,000 known species. This group is very diverse, but they all have some features in common: they have a septate mycelium (remember that mycelium is a network of hyphae), and they produce exospores (basidiospores) on a structure called a basidium. Basidiomycetes also produce complex sporocarps (i.e., fruiting body).

    Known representatives of this phylum include the famous button mushroom Agaricus bisporus, plant fungal pathogens such as smuts and rusts, hallucinogenic mushrooms such as Pcylocibe cubensis, and also deadly, poisonous mushrooms like Amanita virosa (Figure 5).

    Basidiomycota life cycle

    Basidiomycetes can reproduce either sexually (through the production of basidiospores) or asexually by the production of asexual spores. To better understand this, let's look at steps in the sexual reproduction of Basidiomycetes (Figure 6).

    The cycle starts with basidiospores germinating into mycelia that can be of either + or - mating type. Then, the fusion between two mycelia with different mating types forms a dikaryotic mycelium.

    Plasmogamy is the fusion of cytoplasm from two different hyphae, forming a dikaryon.

    After a dikaryotic mycelium forms, it undergoes mitosis to form a basidiocarp containing cells known as basidia. These basidia cells then go through the process of karyogamy (fusion of two nuclei) to form diploid (2n) nuclei zygote. The zygote will then undergo meiosis and cell division to produce basidiospores. Then, the cycle starts again with the germination of basidiospores!

    Ascomycota

    Like Basidiomycota, the phylum Ascomycota has a septate mycelium. However, they produce sexual endospores called ascospores. These spores are found inside a structure known as an ascus. The stages are fairly similar to what we saw in the sexual reproduction of Basidiomycetes. Ascomycetes can also reproduce asexually by the formation of asexual spores that undergo mitosis and then germination to produce more mycelia (Figure 7).

    Recall that although yeasts and mold are a part of this phylum, they do not reproduce the same way as multicellular Ascomycetes!

    Some important fungi in this phylum include:

    • Penicillium chrysogenum - a type of Penicillium fungus that can be used to develop the antibiotic penicillin.
    • P. roqueforti - a fungus that is used in the production of blue-veined cheeses such as Roquefort cheese.
    • Saccharomyces cerevisiae - a unicellular fungi (yeast) used in the fermentation of wine, beer, and bread.
    • Gibberella fujikuroi - a type of fungal plant pathogen that causes disease in rice seedlings.
    • Candida albicans - you have probably heard about this one before. C. albicans is a yeast that is part of our normal microbial flora. However, physiological changes may cause it to become pathogenic and cause diseases such as candidiasis in humans.
    • Glutinoglossum glutinosum - a type of earth tongue fungus (tongue-shaped).
    • True truffle (genus Tuber) - subterranean, potato-shaped fungi that is highly expensive.
    • Microstoma floccosum - small, cup-shaped fungi that are mostly forest saprobes.

    Figure 8 shows some examples of macroscopic fungi in the Ascomycota phylum.

    Chytridiomycota

    Fungi in the phylum chytridiomycota have a single posterior whiplash flagellum and mostly occur in aquatic environments. These fungi lack a true mycelium. Chytrids reproduce sexually or asexually through the formation of motile spores called zoospores. Important fungi in this phylum include parasitic fungi that kill frogs and other amphibians such as batrachochytrium dendrobatitis (Figure 9).

    Glomeromycota

    Fungi in this phylum were usually assigned to the phylum Zygomycota, but thanks to phylogenetic analysis of DNA sequences, researchers placed them in their own phylum known as the Glomeromycota phylum. Glomeromycetes lack septate hyphae and produce large multi-nucleated spores, and most likely reproduce asexually. They are mostly associated with mycorrhizal associations, meaning that they grow in mutualistic association with the roots of plant hosts (Figure 10).

    Now, I hope that you feel more confident in your understanding of Fungi!

    Fungi - Key takeaways

    • Fungi are defined as spore-producing eukaryotic organisms found in the Fungi kingdom.
    • Most fungi are filamentous and contain individual filaments called hyphae. A network of hyphae is called mycelium, and it is used for nutrient absorption.
    • Fungi can obtain their food in two ways: as parasites or as saprobes.
    • Most fungi can reproduce sexually and/or asexually by forming spores.
    • Fungi are classified based on phylogenetics, and it classifies the kingdom Fungi into seven phyla: Ascomycota, Basidiomycota, Glomeromycota, Microsporidia, Blastocladiomycota, Neocallimastigomycota, and Chytridiomycota.

    References

    1. Constantine John Alexopoulos, Mims, C. W., & Blackwell, M. (2014). Introductory mycology. Wiley India Pvt. Ltd.
    2. Robson, D. (2020). 21St Century Guidebook To Fungi. Cambridge Univ Press.
    3. Woese, C. R., Kandler, O., & Wheelis, M. L. (1990). Towards a Natural System of Organisms: Proposal for the Domains Archaea, Bacteria, and Eucarya. Proceedings of the National Academy of Sciences of the United States of America, 87(12), 4576–4579. https://www.jstor.org/stable/2354364
    Frequently Asked Questions about Fungi

    What is a simple definition of fungi?

    Fungi are defined as spore-producing eukaryotic organisms found in the Fungi kingdom. 

    What are 2 examples of fungi?

    Two well-known examples of fungi are yeasts, like Saccharomyces cerevisiae (used in food production) and molds, like the ones you get on food if you leave it out for too long!

    What are 5 characteristics of fungi?

    Fungi have the 5 following characteristics:

    • Fungi are eukaryotes, just like animals and plants.
    • Fungi have the ability to absorb externally digested nutrients and are heterotrophic. Fungi can be parasites or saprobes (consuming dead organic matter). Some can form symbiotic relationships with plants.
    • Fungi are achlorophyllous (they contain no chlorophyll).
    • Most fungi are considered multicellular, but some fungi, such as yeasts, are unicellular. 
    • Multicellular fungi may have the ability to reproduce by sexual or asexual spores. Yeasts (unicellular fungi), however, reproduce by budding or binary fission

    How do you identify fungi?

    Some fungi species can be identified by looking at them through the microscope and observing their size, colour, shape or other characteristics. Additionally, the smell can give away what type of fungi you are dealing with.

    Do fungi have DNA?

    Yes, fungi have DNA. Because they are eukaryotic organisms, their DNA is contained in a nucleus and wrapped around histone proteins.

    Test your knowledge with multiple choice flashcards

    _____ fungi obtain their food by infecting living organisms. 

    Which is the following is true about fungi?

    ____  obtain their food by attacking dead organic matter.

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